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Microbiology

The gut microbiome in health and disease

  • 3 things to know
  • A2 6

Overview

The functions of a healthy gut microbiome, dysbiosis and antibiotics, high-throughput and 16S sequencing, culture and metabolomics, inflammatory bowel disease, obesity and bowel cancer, and faecal microbiota transplants.

What you need to know

Answer each one before you reveal it.

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Key term

What is the gut microbiome?

Key term

What does a healthy gut microbiome do?

Key term

What features mark a healthy gut microbiome?

Questions from this subtopic

Each one with the model answer underneath.

  1. 1

    What is the gut microbiome?

    Model answer

    The gut microbiome is the community of trillions of microorganisms, mainly bacteria, living in the digestive tract. Most live in the large intestine.

  2. 2

    What does a healthy gut microbiome do?

    Model answer

    A healthy microbiome ferments dietary fibre into short-chain fatty acids that nourish the gut lining. The microbiome also makes vitamins and helps keep out pathogens.

  3. 3

    What features mark a healthy gut microbiome?

    Model answer

    A healthy microbiome is diverse, with many different species in balance. The community is stable and recovers after disturbance.

  4. 4

    What is dysbiosis?

    Model answer

    Dysbiosis is an imbalance in the gut microbiome, often with lower diversity. Dysbiosis has been linked to a range of diseases.

  5. 5

    How can antibiotics affect the gut microbiome?

    Model answer

    Antibiotics kill helpful gut bacteria as well as pathogens. Diversity falls, and harmful bacteria such as Clostridioides difficile can take over.

  6. 6

    How does high-throughput sequencing help study the gut microbiome?

    Model answer

    High-throughput sequencing reads the DNA of all the microbes in a sample at once. Species that cannot be grown in the laboratory can still be identified.

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